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    82 repositories

    • sheffield-bioinformatics-core.github.io

      Public
      Website for The University of Sheffield Bioinformatics Core
      HTML
      •
      Creative Commons Attribution Share Alike 4.0 International
      •2.5k•6•0•3•Updated Oct 4, 2024Oct 4, 2024

    • r-online

      Public
      Online Training Materials for R
      HTML
      •0•0•0•0•Updated Aug 1, 2024Aug 1, 2024

    • data_science_bootcamp

      Public
      R visualisation tutorial for Data Science Bootcamp
      HTML
      •0•0•0•0•Updated Jul 28, 2024Jul 28, 2024

    • rnaseq-r-online

      Public
      HTML
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      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated Jul 24, 2024Jul 24, 2024

    • command-line-bio

      Public
      New workshop on using command-line for Bioinformatics
      HTML
      •0•0•0•0•Updated Jul 13, 2024Jul 13, 2024

    • nf-core-nanopath

      Public
      Nextflow
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      MIT License
      •0•1•0•0•Updated Jul 3, 2024Jul 3, 2024

    • Cytoscape_Course

      Public
      This is a basic cytoscape course intended for beginners to get training with biological network analysis.
      HTML
      •2•0•0•0•Updated Jun 12, 2024Jun 12, 2024

    • bacass

      Public
      Simple bacterial assembly and annotation pipeline
      Nextflow
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      MIT License
      •41•0•0•0•Updated May 31, 2024May 31, 2024

    • wf-template

      Public
      Nextflow workflow template repository
      Python
      •
      Other
      •29•0•0•0•Updated May 24, 2024May 24, 2024

    • misc_scripts

      Public
      Repository for miscellaneous scripts created by SBC
      Shell
      •1•0•0•0•Updated May 23, 2024May 23, 2024

    • sbc-invoicing

      Public
      R-Shiny App to build a .pdf Invoice, check the parent package
      R
      •3•0•0•0•Updated Apr 13, 2024Apr 13, 2024

    • wr_bbsrc_dtp_analytics2_2024

      Public
      HTML
      •0•0•0•0•Updated Mar 27, 2024Mar 27, 2024

    • rnaseq-beginners

      Public
      Half-day course on analysing RNA-seq data from counts
      HTML
      •0•0•0•0•Updated Mar 20, 2024Mar 20, 2024

    • stats-in-r

      Public
      Statistical Analysis of Biological Data
      HTML
      •3•0•0•0•Updated Feb 28, 2024Feb 28, 2024

    • rnaseq-introduction-online

      Public
      HTML
      •0•0•0•0•Updated Feb 4, 2024Feb 4, 2024

    • NanoCLUST

      Public
      NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads
      Nextflow
      •
      MIT License
      •48•1•0•0•Updated Jan 5, 2024Jan 5, 2024

    • nbug11

      Public
      Repo for all materials for nbug11
      0•0•0•0•Updated Dec 13, 2023Dec 13, 2023

    • nf-core-user-docs

      Public
      Documentation and user guides relating to deployment of nf-core pipelines on Stanage
      Shell
      •
      MIT License
      •2•1•1•0•Updated Oct 12, 2023Oct 12, 2023

    • scrnaseq_course

      Public
      Our course on the analysis of Single-cell RNA-Seq
      HTML
      •1•0•0•0•Updated Oct 2, 2023Oct 2, 2023

    • wr_bbsrc_dtp_analytics2_2023

      Public
      Repository for Analytics 2 teaching for White Rose BBSRC DTP (2023 edition)
      HTML
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      GNU General Public License v3.0
      •0•0•0•0•Updated Jun 25, 2023Jun 25, 2023

    • BMS31004_2023

      Public
      HTML
      •0•0•0•0•Updated Mar 27, 2023Mar 27, 2023

    • aplanat_UoS

      Public
      Simplifies bokeh plotting, particularly tailored for JupyterLab
      Python
      •
      Other
      •1•0•0•0•Updated Feb 20, 2023Feb 20, 2023

    • 2023_01_Dimen_DTP_training

      Public
      Data Analysis Training for DiMeN DTP Students
      0•0•0•0•Updated Jan 24, 2023Jan 24, 2023

    • bms31004_2022

      Public
      BMS31004 - Bioinformatics for Biomedical Science
      HTML
      •0•0•0•0•Updated Jan 9, 2023Jan 9, 2023

    • white_rose_dtp_analytics2

      Public
      Materials for Analytics 2 module for the White Rose DTP
      HTML
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      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated Dec 19, 2022Dec 19, 2022

    • spatial_transcriptomics_tutorial

      Public
      A bare bones tutorial on how to analyse spatial transcriptomics data from raw sequencing reads to visualising spatially distinct features
      bioinformaticssequencingbioinformatics-analysissingle-cell-rna-seqspatial-transcriptomicstutorial
      HTML
      •0•4•0•0•Updated Oct 19, 2022Oct 19, 2022

    • nf-core-uosnanoclust

      Public
      Nextflow
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      MIT License
      •0•0•0•0•Updated Aug 8, 2022Aug 8, 2022

    • periscope

      Public
      A tool to quantify sub-genomic RNA (sgRNA) expression in SARS-CoV-2 artic network amplicon nanopore sequencing data.
      Python
      •
      GNU General Public License v3.0
      •6•17•22•0•Updated May 30, 2022May 30, 2022

    • periscope-variants-publication

      Public
      0•0•0•0•Updated May 24, 2022May 24, 2022

    • ngs_intro_workshop

      Public
      Introductory workshop on analysis of NGS data in Galaxy and other online tools
      HTML
      •0•0•0•0•Updated May 20, 2022May 20, 2022