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@AllenInstitute

Allen Institute

Please visit http://alleninstitute.github.io/ for more information.

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  1. AllenSDK AllenSDK Public

    code for reading and processing Allen Institute for Brain Science data

    Jupyter Notebook 343 149

  2. dipde dipde Public

    Numerical solver for coupled population density equations

    Python 22 13

Repositories

Showing 10 of 392 repositories
  • MIES Public

    Multichannel Igor Electrophysiology Suite

    AllenInstitute/MIES’s past year of commit activity
    IGOR Pro 23 7 288 8 Updated Oct 21, 2024
  • npc_sessions_cache Public

    Scripts, notebooks and plots that operate on NWB or NWB-like objects from `npc_sessions` in the cloud.

    AllenInstitute/npc_sessions_cache’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Oct 21, 2024
  • TEM_setup Public

    Setup instructions and script for the TEM computers.

    AllenInstitute/TEM_setup’s past year of commit activity
    Shell 0 0 0 0 Updated Oct 20, 2024
  • pigeon Public

    A STOMP client with message definitions via Pydantic

    AllenInstitute/pigeon’s past year of commit activity
    Python 0 BSD-3-Clause 1 1 0 Updated Oct 20, 2024
  • axonal_connectomics Public

    Repository for tools developed for axonal connectomics

    AllenInstitute/axonal_connectomics’s past year of commit activity
    Jupyter Notebook 2 0 3 0 Updated Oct 20, 2024
  • npc_sessions Public

    Tools for accessing and packaging data from behavior and epyhys sessions from the Mindscope Neuropixels team, in the cloud.

    AllenInstitute/npc_sessions’s past year of commit activity
    Python 1 1 54 (3 issues need help) 1 Updated Oct 19, 2024
  • npc_sync Public

    Repackaging of AllenSDK.SyncDataset with extra functionality, compatible with data in the cloud.

    AllenInstitute/npc_sync’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Oct 19, 2024
  • ACE Public

    R Shiny app for comparison of annotations (e.g., cell type assignments)

    AllenInstitute/ACE’s past year of commit activity
    R 1 1 7 (1 issue needs help) 0 Updated Oct 19, 2024
  • deep-neurographs Public

    Deep-Neurographs is a Python module that utilizes machine learning to detect and correct false splits in a predicted neuron segmentation.

    AllenInstitute/deep-neurographs’s past year of commit activity
    Python 3 MIT 0 0 0 Updated Oct 19, 2024
  • npc_lims Public

    Tools to fetch and update paths, metadata and state for Mindscope Neuropixels sessions, in the cloud.

    AllenInstitute/npc_lims’s past year of commit activity
    Python 0 MIT 0 6 1 Updated Oct 18, 2024
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