Kundaje Lab
Compbio and machine learning code repositories from the Kundaje Lab at Stanford Genetics and Computer Science Depts.
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- Stanford University
- https://kundajelab.stanford.edu
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atac_dnase_pipelines
atac_dnase_pipelines PublicATAC-seq and DNase-seq processing pipeline
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chrombpnet
chrombpnet PublicBias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)
Repositories
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- variant-scorer Public
A framework to score and analyze variant effects genome-wide using ChromBPNet models
kundajelab/variant-scorer’s past year of commit activity - chrombpnet Public
Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)
kundajelab/chrombpnet’s past year of commit activity - affinity_distillation Public
kundajelab/affinity_distillation’s past year of commit activity - CTCFMutants Public
kundajelab/CTCFMutants’s past year of commit activity